Supportive services

Flexible approach to gene panels

In diagnosing complex disorders, it may be necessary to use wider range of genes than initially determined, or combine different gene panels. We can easily redesign our existing gene panels to match your clinical practice or research project. Additional fee will not be added. Contact info[at]asperbio.com to ask for personal solutions.

Pre- and post-test consultation by email/phone/Skype

Medical geneticist is available for pre- and post-test consultation (60 €) to referring physicians and health-care professionals. Contact info[at]asperbio.com to register for consultation.

Contacts

General contacts

Asper Biogene LLC
Vaksali 17a, 50410
Tartu, Estonia
info[at]asperbio.com
www.asperbio.com
Tel  +372 7307 295
Fax +372 7307 298Asper Biogene Customer Service
Contact us:

    Your Name (required)

    Your Email (required)

    Subject

    Your Message (required)


    Hypothyroidism and Thyroid Hormone Resistance NGS panel

    Hypothyroidism and Thyroid Hormone Resistance
    NGS panel

    Genes
    (full
    coding
    region):
    DUOX2, DUOXA2, GNAS, HESX1, IYD, NKX2-1, NKX2-5, PAX8, POU1F1, PROP1, SECISBP2, SLC5A5, SLC16A2, SLC26A4, STX16, TG, THRA, THRB, TPO, TRHR, TSHB, TSHR

    List of diseases covered by the panel


    Lab method: NGS panel with CNV analysis

    TAT: 6-9 weeks

    Specimen requirements: 2-4 ml of blood with anticoagulant EDTA

    1 µg DNA in TE, AE or pure sterile water at 100-250 ng/µl
    The A260/A280 ratio should be 1.8-2.0. DNA sample should be run on an agarose gel as a single band, showing no degradation, alongside with a quantitative DNA marker.


    Ordering information: Go to online ordering or download sample submission form

    Deletion/duplication analysis

    Genes: GNAS, STX16

    Lab method: MLPA

    TAT: 4-6 weeks

    Specimen requirements: 2-4 ml of blood with anticoagulant EDTA

    1 µg DNA in TE, AE or pure sterile water at 100-250 ng/µl
    The A260/A280 ratio should be 1.8-2.0. DNA sample should be run on an agarose gel as a single band, showing no degradation, alongside with a quantitative DNA marker.


    Ordering information: Go to online ordering or download sample submission form

    Genetic testing services

    Genetic testing at Asper Biogene

    Genetic testing services offered by Asper Biogene comply with the highest level quality standards and are certified by Clinical Laboratory Improvement Amendments (CLIA) and ISO 15189:2012. We regularly participate in external quality assurance schemes to maintain the highest level of testing services.

    Single mutation analysis

    Single mutation analysis for any familial or known mutation.

    Single gene sequencing

    Sequencing of the entire coding region of any single gene.

    Targeted regions sequencing

    Targeted regions sequencing includes the analysis of selected hotspot regions in disease associated genes.

    Deletion/duplication analysis

    Deletion/duplication analysis for the genes listed in our test menu.

    Next generation sequencing (NGS) panels

    Our testing menu includes a wide variety of carefully constructed NGS panels. Essential medical specialities are covered by our clinically relevant, validated, and up-to-date gene panels. NGS panels include the sequencing of entire coding regions plus flanking intronic regions. Likely pathogenic and pathogenic variants are confirmed by Sanger sequencing.

    In addition, CNV analysis based on sequencing coverage depth data is also available. Likely pathogenic and pathogenic findings are confirmed using another technology such as aCGH, qPCR, or MLPA when applicable. 

    We upgrade the existing gene panels continuously as well as create additional ones based on new scientific knowledge and customer requests. 

    Customized NGS panels

    In addition to ready-to-use tests, we develop and implement custom-made tests and solutions to meet our customers’ specific needs. 

    Existing NGS panels are easily adjustable for your clinical practice and patients’ indications.

    For customized NGS panels, fill in the Custom test order form or ask for more information on redesigning solutions for additional panels.

    Whole exome sequencing (WES)

    WES includes the sequencing of coding regions and their flanking intronic regions in approximately 20,000 genes of the human genome. The coding region represents 1–2% of the human genome but contains approximately 85% of the disease-causing mutations. Phenotype/diagnosis associated likely pathogenic and pathogenic variants are confirmed by Sanger sequencing.

    CNV analysis based on sequencing coverage depth data is available as an expanded testing option. Likely pathogenic and pathogenic findings are confirmed using another technology such as aCGH, qPCR, or MLPA when applicable.

    WES is an effective option to detect the rare causal variants of Mendelian disorders. Service can be useful for clinicians to diagnose affected patients with conditions that have eluded traditional diagnostic approaches.

    Whole genome sequencing (WGS)

    WGS determines the complete DNA sequence of an individual’s genome, including chromosomal DNA and mitochondrial DNA.

    WGS covers the sequencing of the entire coding and non-coding regions of the genome. WGS enables detection of non-coding sequence variants that could be informative in diagnosing genetically and phenotypically heterogeneous or undiagnosed diseases. WGS can reveal the full range of variations, including single nucleotide variations, copy number variations, changes in transposable elements, and structural variations.

    Phenotype/diagnosis associated likely pathogenic and pathogenic variants are confirmed by Sanger sequencing.

    Trio exome or genome sequencing of family members (usually affected child with parents) is highly recommended for faster and more precise identifying of disease-causing mutations and determining the inheritance pattern. In addition to the patient’s phenotype/disease associated variants, incidental findings are reported according to  ACMG recommendations for reporting of incidental findings in clinical exome and genome sequencing.

    Bioinformatic analysis and interpretation of customer’s genetic data

    Asper Biogene’s qualified geneticists analyze and interpret your sequencing data, deletion/duplication analysis results etc.

    Ask for a customized solution from our experienced team to facilitate your clinical practice.

    Results report

    Our results report contains detailed information on the detected variants, including bioinformatics analysis, biological interpretation, comprehensive clinical interpretation and recommendations for follow-up analyses. Rare and known pathogenic variants are assessed and classified according to the standards and guidelines of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology. Confirmation of likely pathogenic or pathogenic variants is performed by Sanger sequencing.

     

     

    Thyroid Dyshormonogenesis NGS panel

    Thyroid Dyshormonogenesis
    NGS panel

    Genes
    (full coding
    region):
    DUOX2, DUOXA2, IYD, SLC5A5, TG, TPO

    List of diseases covered by the panel


    Lab method: NGS panel with CNV analysis

    TAT: 6-9 weeks

    Specimen requirements: 2-4 ml of blood with anticoagulant EDTA

    1 µg DNA in TE, AE or pure sterile water at 100-250 ng/µl
    The A260/A280 ratio should be 1.8-2.0. DNA sample should be run on an agarose gel as a single band, showing no degradation, alongside with a quantitative DNA marker.


    Ordering information: Go to online ordering or download sample submission form

    Deletion/duplication analysis

    Genes: FOXE1, NKX2-1, PAX8, TPO, TSHR

    Lab method: MLPA

    TAT: 4-6 weeks

    Specimen requirements: 2-4 ml of blood with anticoagulant EDTA

    1 µg DNA in TE, AE or pure sterile water at 100-250 ng/µl
    The A260/A280 ratio should be 1.8-2.0. DNA sample should be run on an agarose gel as a single band, showing no degradation, alongside with a quantitative DNA marker.


    Ordering information: Go to online ordering or download sample submission form

    Vitelliform Macular Dystrophy

    Vitelliform Macular Dystrophy
    NGS panel

    Genes
    (full coding
    region:
    BEST1, IMPG1, PRPH2

    Lab method: NGS panel with CNV analysis

    TAT: 6-9 weeks

    Specimen requirements: 2-4 ml of blood with anticoagulant EDTA

    1 µg DNA in TE, AE or pure sterile water at 100-250 ng/µl
    The A260/A280 ratio should be 1.8-2.0. DNA sample should be run on an agarose gel as a single band, showing no degradation, alongside with a quantitative DNA marker.


    Ordering information: Go to online ordering or download sample submission form

    Sequencing of the BEST1 gene

    Genes
    (full coding
    region):
    BEST1

    Lab method: NGS

    TAT: 2-4 weeks

    Specimen requirements: 2-4 ml of blood with anticoagulant EDTA

    1 µg DNA in TE, AE or pure sterile water at 100-250 ng/µl
    The A260/A280 ratio should be 1.8-2.0. DNA sample should be run on an agarose gel as a single band, showing no degradation, alongside with a quantitative DNA marker.


    Ordering information: Go to online ordering or download sample submission form

    Deletion/duplication analysis

    Genes: BEST1, PRPH2

    Lab method: MLPA

    TAT: 4-6 weeks

    Specimen requirements: 2-4 ml of blood with anticoagulant EDTA

    1 µg DNA in TE, AE or pure sterile water at 100-250 ng/µl
    The A260/A280 ratio should be 1.8-2.0. DNA sample should be run on an agarose gel as a single band, showing no degradation, alongside with a quantitative DNA marker.


    Ordering information: Go to online ordering or download sample submission form

    Indications for genetic testing:

    1. Confirmation of clinical diagnosis
    2. Genetic counseling
    3. Prenatal diagnosis for known familial mutation

    Vitelliform macular dystrophy is an autosomal dominant disorder associated with a vitelliform “egg yolk” lesion that results from abnormal accumulation of lipofuscin in the retinal pigment epithelium (RPE). Lesions are usually bilateral, but can be unilateral. In the early stages, accumulation of lipofuscin-like material in the RPE is observed but acuity remains excellent. Later, the affected area becomes deeply and irregularly pigmented, and as the disorder is progressive, it eventually leads to vision loss. Some cases exhibit multiple extramacular lesions, hemorrhaging, or macular holes. Vitelliform macular dystrophy generally reveals itself in childhood or sometimes later during the teenage years. Severity of vision loss and age of onset exhibit inter- and intra-familial variability.

    X-Linked Retinitis Pigmentosa

    X-Linked Retinitis Pigmentosa
    NGS panel

    Genes
    (full coding
    region):
    OFD1, RP2, RPGR (ORF15 included)

    Lab method: NGS panel with CNV analysis

    TAT: 6-9 weeks

    Specimen requirements: 2-4 ml of blood with anticoagulant EDTA

    1 µg DNA in TE, AE or pure sterile water at 100-250 ng/µl
    The A260/A280 ratio should be 1.8-2.0. DNA sample should be run on an agarose gel as a single band, showing no degradation, alongside with a quantitative DNA marker.


    Ordering information: Go to online ordering or download sample submission form

    Targeted regions sequencing

    Genes (targeted regions): RP2, RPGR (ORF15 included)

    Lab method: Next generation sequencing, Sanger sequencing

    TAT: 2-4 weeks

    Specimen requirements: 2-4 ml of blood with anticoagulant EDTA

    2 µg DNA in TE, AE or pure sterile water at 100-250 ng/µl
    The A260/A280 ratio should be 1.8-2.0. DNA sample should be run on an agarose gel as a single band, showing no degradation, alongside with a quantitative DNA marker.


    Ordering information: Go to online ordering or download sample submission form

    Sequencing of ORF15 region (RPGR gene)

    Genes: ORF15 region (RPGR gene)

    Lab method: Sanger sequencing

    TAT: 2-4 weeks

    Specimen requirements: 2-4 ml of blood with anticoagulant EDTA

    1,5 µg DNA in TE, AE or pure sterile water at 100-250 ng/µl
    The A260/A280 ratio should be 1.8-2.0. DNA sample should be run on an agarose gel as a single band, showing no degradation, alongside with a quantitative DNA marker.


    Ordering information: Go to online ordering or download sample submission form

    Deletion/duplication analysis

    Genes: RP2, RPGR

    Lab method: MLPA

    TAT: 4-6 weeks

    Specimen requirements: 2-4 ml of blood with anticoagulant EDTA

    1 µg DNA in TE, AE or pure sterile water at 100-250 ng/µl
    The A260/A280 ratio should be 1.8-2.0. DNA sample should be run on an agarose gel as a single band, showing no degradation, alongside with a quantitative DNA marker.


    Ordering information: Go to online ordering or download sample submission form

    Indications for genetic testing:

    1. Confirmation of clinical diagnosis
    2. Determination of female carriers
    3. Genetic counseling

    Genetic testing for x-linked retinitis pigmentosa is preferred in the male patients/families with nonsyndromic retinitis pigmentosa and with family history of x-linked retinitis pigmentosa.
    Retinitis pigmentosa (RP) is an inherited retinal dystrophy caused by the loss of photoreceptors and characterized by retinal pigment deposits visible on fundus examination. Affected individuals first experience night blindness, followed by reduction of the peripheral visual field and, sometimes, loss of central vision late in the course of the disease and eventually leading to blindness after several decades. Signs and symptoms often first appear in childhood, but severe visual problems do not usually develop until early adulthood. In some cases, RP is characterized by cone-rod dystrophy, in which the decrease in visual acuity predominates over the visual field loss. RP is usually nonsyndromic but there are also many syndromic forms. The main risk factor is a family history of retinitis pigmentosa.

    Asper Ophthalmics

    Asper Ophthalmics

    Achromatopsia
    Age-Related Macular Degeneration
    Aniridia
    Anophthalmia/Microphthalmia/Coloboma/Anterior Segment Dysgenesis
    Bardet Biedl Syndrome, McKusick-Kaufman Syndrome, Borjeson-Forssman-Lehmann Syndrome, Alström Syndrome, Albright Hereditary Osteodystrophy
    Cataract
    Choroideremia
    Cone-Rod Dystrophy
    Congenital Fibrosis of Extraocular Muscles
    Congenital Stationary Night Blindness
    Corneal Dystrophy
    Ectopia Lentis
    Eye Diseases NGS panel of 294 genes
    Glaucoma
    Leber Congenital Amaurosis
    Leber Hereditary Optic Neuropathy

    Norrie Disease
    Oculocutaneous Albinism, Ocular Albinism, Hermansky-Pudlak Syndrome, Chediak-Higashi Syndrome
    Optic Atrophy
    Papillorenal Syndrome
    Retinitis pigmentosa
    Retinoblastoma
    Senior-Loken Syndrome
    Stargardt Disease
    Usher Syndrome
    Vitelliform Macular Dystrophy
    Vitreoretinopathy
    X-Linked Retinoschisis
    Whole Exome Sequencing

    Asper Ophthalmics is a comprehensive collection of genetic tests targeted at the diagnostics of a wide variety of hereditary ocular disorders, including retinal disorders, corneal dystrophies, and age related ophthalmic conditions.

    Our genetic tests assist clinicians in confirming diagnoses and informing patients about their risks for inherited eye diseases.