Cystic Fibrosis

Cystic Fibrosis

Sequencing of the CFTR gene

Genes
(full
coding
region):
CFTR

Lab method: Next generation sequencing. Large deletions (except CFTRdele2,3, CFTRdele21, 1949del84) and duplications of the CFTR gene will not be identified.

Price / TAT: 360 EUR / 4-6 weeks

Specimen requirements: 2-4 ml of blood with anticoagulant EDTA

1 µg DNA in TE, AE or pure sterile water at 100-250 ng/µl
The A260/A280 ratio should be 1.8-2.0. DNA sample should be run on an agarose gel as a single band, showing no degradation, alongside with a quantitative DNA marker.


Ordering information: Go to online ordering or download sample submission form

Deletion/duplication analysis of the CFTR gene

Genes: CFTR

Lab method: MLPA

Price / TAT: 310 EUR / 4-6 weeks

Specimen requirements: 2-4 ml of blood with anticoagulant EDTA

1 µg DNA in TE, AE or pure sterile water at 100-250 ng/µl
The A260/A280 ratio should be 1.8-2.0. DNA sample should be run on an agarose gel as a single band, showing no degradation, alongside with a quantitative DNA marker.


Ordering information: Go to online ordering or download sample submission form

Indications for genetic testing:

1. Confirmation of clinical diagnosis
2. Carrier testing for family members of CF patients
3. Genetic counseling
4. Prenatal diagnosis for known familial mutation

Cystic fibrosis (CF) is an autosomal recessive, multisystem disease. CF is characterized by recurrent lung infections, malabsorption, malnutrition, and male infertility. Cystic fibrosis is caused by thick and sticky mucus due to disturbances of salt homeostasis in cells.

CF is caused by mutations in the CFTR gene encoding cystic fibrosis transmembrane conductance regulator protein. The CFTR protein functions as a chloride channel expressed on epithelial cell membranes and controls the regulation of other transport pathways.

Cystic Fibrosis read more

Cystic Fibrosis

Cystic fibrosis (CF; OMIM®: 219700) is autosomal recessive, multisystem disease leading to significant morbidity and early death. Characteristic manifestations include recurrent lung infections, malabsorption, malnutrition, and infertility (especially in males). Cystic Fibrosis is caused by thick and sticky mucus due to the disturbances of salt homeostasis in cells. Biochemical hallmark of the disease is elevated sweat chloride concentration.

CF is caused by mutations in the cystic fibrosis conductance regulator gene (CFTR; OMIM®: *602421; HGNC number: 1884), located on chromosome 7. CFTR functions as a chloride channel and controls the regulation of other transport pathways. Asymptomatic carrier parents, who have no physiological or biochemical outcome that enables routine identification, typically have one CFTR mutation; whereas diseased progeny carry at least two mutations, one on each CFTR gene allele. CF has a high incidence in people of Northern European descent, occurring in approximately 1 in 2500 live births.

The most common mutant allele is the F508del mutation [1], which is a deletion of three basepairs at the 508th codon causing the deletion of a phenylalanine residue and subsequent defective intracellular processing of the CFTR protein that is an important chloride channel. Worldwide, the F508del mutation is responsible for approximately two-thirds (66%) of all CF chromosomes; however, there is great mutational heterogeneity in the remaining one-third of all alleles [2]. The next most frequent mutation was G542TER – a G-to-T change in nucleotide 1756 in exon 11 is responsible for a stop mutation in codon 542 [3].

Not only is there heterogeneity in the mutations causing Cystic Fibrosis, but the pathogenetic mechanisms also vary. Deletion of phenylalanine-508 appears to cause disease by abrogating normal biosynthetic processing and thereby resulting in retention and degradation of the mutant protein within the endoplasmic reticulum. Other mutations, such as the relatively common G551D mutation [4], appear to be normally processed and, therefore, must cause disease through some other mechanism. G551D mutation, which is within the first nucleotide-binding fold of the CFTR, is the third most common CF mutation, with a worldwide frequency of 3.1% among CF chromosomes [5]. Several mutations result in proteins that are too short because production is ended prematurely. Less common mutations produce proteins that do not use energy normally, do not allow chloride to cross the membrane appropriately, or are degraded at a faster rate than normal. Mutations may also lead to fewer copies of the CFTR protein being produced [6].

References:
[1]    Kerem B, Rommens JM, Buchanan JA, Markiewicz D, Cox TK, Chakravarti A, Buchwald M, Tsui LC: Identification of the cystic fibrosis gene: genetic analysis. Science 1989, 245:1073-1080.
[2]    Bobadilla JM, Macek M Jr, Fine JP, Farrell JP: Cystic fibrosis: A worldwide analysis of CFTR mutations – correlation with incidence data and application to screening. Human Mutation 2002, 19 (6): 575-606.
[3]    Kerem B, Zielenski J, Markiewicz D, Bozon D, Gazit E, Yahav J, Kennedy D, Riordan JR, Collins FS, Rommens JM, Tsui L-C: Identification of mutations in regions corresponding to the 2 putative nucleotide (ATP)-binding folds of the cystic fibrosis gene. Proc. Nat. Acad. Sci. 1990, 87: 8447-8451.
[4]    Cutting GR, Kasch LM, Rosenstein BJ, Tsui L-C, Kazazian HH Jr, Antonarakis SE: Two patients with cystic fibrosis, nonsense mutations in each cystic fibrosis gene, and mild pulmonary disease. New Eng. J. Med. 1990, 323: 1685-1689.
[5]    Hamosh A, King TM, Rosenstein BJ, Corey M, Levison H, Durie P, Tsui L-C, McIntosh I, Keston M, Brock DJH, Macek M Jr, Zemkova D and 20 others: Cystic fibrosis patients bearing both the common missense mutation gly-to-asp at codon 551 and the delta-F508 mutation are clinically indistinguishable from delta-F508 homozygotes, except for decreased risk of meconium ileus. Am. J. Hum. Genet. 1992, 51: 245-250.
[6]    Rowe SM, Miller S, Sorscher EJ: “Cystic fibrosis”. N. Engl. J. Med. 2005, 352 (19): 1992–2001.